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The BLAST mapping script can be run from the SAMap_ Jupyter notebook. Depending on the number of cores available on your machine and the size/type of the input fasta files, this step may take up to around 4 hours. Running SAMap. To run SAMap, use the SAMAP function in samap/ Please see its function documentation for a ...
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SAMap iterates between two modules. The first module constructs a genegene bipartite graph with crossspecies edges connecting homologous gene pairs, initially weighted by protein sequence similarity ().In the second module, SAMap uses the genegene graph to project the two singlecell transcriptomic datasets into a joint, lowerdimensional manifold representation, from which each cell's ...
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The System for Award Management (SAM) is the Official Government system that consolidated the capabilities of CCR/FedReg, ORCA, and EPLS
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SAMaplinked gene pairs that are enriched in cell type pairs between S. mediterranea and S. mansoni. (A) Rows: linked cell types. Schistosome cell types correspond to Leiden clusters. Columns: genes linked by SAMap with overlapping eukaryotic eggNOG orthology groups. We calculate the average standardized expression of each gene in an orthology ...
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The performance of SAMap and Seurat for the speciesspecific cell types is not consistent across all cell types and comparisons. For example, SAMap correctly assigns zero scores to mouse Meis2, Peri, and SMC in the humanmouse comparison, but incorrectly matches mouse SMC to marmoset Peri with a high matching score.
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SAMAP's core policy objectives because they did not seem to accommodate indigenous . ... 2017, p. 4) Without getting into the intricacies of IK involving different views, involving IK as 'local ...
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SAMap: P (m:m) : : : : Moma (50k) SAMap: B (m:m) : : : : Open in a separate window. The genegene matching is either done using ProtBERT (P) or BLAST (B) and can be onetoone (1:1) or manytomany (m:m). ...
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